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GST for Clinics and Hospitals in 2026: What's Exempt, What Isn't, and When IGST Applies

Most of what a clinic does is exempt from GST — but "most" is where the trouble starts. Here is where GST does apply to a clinic or hospital after the September 2025 rate changes, what that means for registration and input credit, and why IGST is rarer than most receptionists think.

By the Medixar team · Published · 10 min read · Not tax advice — confirm your position with your CA.

The short answer

Health care services by a clinical establishment or a registered practitioner are exempt. GST appears in a handful of specific places: certain hospital rooms, the over-the-counter pharmacy, cosmetic procedures, food for people who are not patients, and what you charge others to use your premises. Everything else in this article is detail on those five.

What is exempt

The exemption covers health care services provided by a clinical establishment, an authorised medical practitioner or para-medics, and transporting a patient in an ambulance. In this context:

The exemption applies to the hospital's bill as a whole, including the doctors' fees within it. Medicines, consumables and implants used while treating an admitted patient are part of that exempt service, and so is the food served to in-patients.

Where GST does apply

1. Hospital rooms over ₹5,000 a day

A room other than ICU, CCU, ICCU or NICU charged at more than ₹5,000 a day is taxed at 5%, without input tax credit. The tax applies to the whole room charge, not just the part above ₹5,000. This rule dates from July 2022 and was left unchanged by the September 2025 rate changes.

2. The over-the-counter pharmacy

Medicines sold to out-patients and walk-in customers are a taxable sale of goods, separate from any health care service. From 22 September 2025:

ItemBeforeFrom 22 Sep 2025
36 specified life-saving drugs12% or 5%Nil
Other medicines12%5%
Diagnostic kits and reagents, glucometers and strips, gauze and bandages, medical oxygen, surgical gloves, corrective spectacles, many medical instruments12%5%
Thermometers and analysis apparatus18%5%

3. Cosmetic procedures

Cosmetic and plastic surgery is outside the exemption unless it restores anatomy or function lost to a congenital defect, a developmental abnormality, an injury or trauma. Hair transplants are also outside it. The rate is currently unsettled: most guides still apply 18%, but the classification used for cosmetic treatment sits in a group whose rate was cut to 5% without input credit in September 2025, and there is no official clarification yet. Take your CA's view before you bill.

4. Food for people who are not patients

Meals for admitted patients are part of the exempt service. Food sold to attendants, visitors and out-patients is a restaurant service, taxed at 5% without input credit.

5. What you charge others

Renting space to a pharmacy, a laboratory chain or visiting doctors is taxable at 18%, as are most training programmes, conferences, sponsorships and paid parking.

Input tax credit: why the rate cuts matter to an exempt hospital

Because health care services are exempt, the GST a hospital pays on what it buys for those services cannot be claimed back — it is simply a cost. That is why the September 2025 cut on medicines and devices from 12% to 5% lowered hospitals' costs directly. Credit is available only on the taxable side of the business, such as the out-patient pharmacy, and inputs used for both sides have to be apportioned. Room rent above ₹5,000 is treated like an exempt supply for this purpose, because it carries no credit.

One trap: a registered hospital renting premises from an unregistered landlord pays 18% on that rent itself under reverse charge — and if the premises serve exempt services, most of that credit is blocked.

Do you need to register?

CGST and SGST, or IGST?

This is the question receptionists get wrong most often, usually in the direction of charging IGST when it does not apply.

In practice IGST appears for a typical clinic when goods are shipped out of state, when it supplies services to registered businesses elsewhere, for supplies to SEZ units, and for transfers between a chain's own registrations in different states.

E-invoicing

The e-invoicing threshold is ₹5 crore of aggregate turnover in any year since 2017–18, and exempt revenue counts towards it — so many mid-size hospitals are in scope. In practice it bites on the business-to-business taxable supplies, such as rent charged to a registered pharmacy operator, rather than on patient bills. Businesses with turnover of ₹10 crore or more must report an e-invoice within 30 days of its date.

Still unsettled — ask your CA

Advance rulings bind only the parties to them, so treat any single ruling as a signal, not a rule.

Where billing software helps

The mistakes above are almost all classification mistakes made at the counter. Medixar keeps HSN and SAC codes on items and services, splits tax into CGST and SGST or IGST by place of supply when the bill is raised rather than leaving it to the receptionist, and prepares the data for GSTR-1 and GSTR-3B.

See GST billing on your own items

We'll set up your services and pharmacy items on a tenant of your own and walk through the bills.

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Sources

This article explains GST rules as published up to 13 October 2026. It is not tax or legal advice; rates and rules change, so confirm your position with a chartered accountant before acting on it.

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